Professor Karin Verspoor

  • Room: Level: 06 Room: 6.23
  • Building: Doug McDonell Building
  • Campus: Parkville

Research interests

  • Bioinformatics and Computational Bioscience
  • Biomedical Natural Language Processing (Text Mining)
  • Health informatics (Biomedical ontologies)

Personal webpage

http://www.textminingscience.com

Recent publications

  1. Verspoor C, Ofoghi B, Robles Granda M. CommViz: Visualization of semantic patterns in large social communication networks. Information Visualization. Sage Publications. 2018, Vol. 17, Issue 1. DOI: 10.1177/1473871617693039
  2. Panyam NC, Verspoor C, Cohn T, Ramamohanarao K. Exploiting graph kernels for high performance biomedical relation extraction. JOURNAL OF BIOMEDICAL SEMANTICS. Biomed Central. 2018, Vol. 9. DOI: 10.1186/s13326-017-0168-3
  3. Hoogeveen D, Wang L, Baldwin T, Verspoor C. Web forum retrieval and text analytics: A survey. Foundations and Trends in Information Retrieval. 2018, Vol. 12, Issue 1. DOI: 10.1561/1500000062
  4. Lu Y, Sinnott R, Verspoor C. A semantic-based k-anonymity scheme for health record linkage. Studies in Health Technology and Informatics. IOS Press. 2017, Vol. 239. DOI: 10.3233/978-1-61499-783-2-84
  5. Bouadjenek M, Verspoor C, Zobel J. Automated detection of records in biological sequence databases that are inconsistent with the literature. JOURNAL OF BIOMEDICAL INFORMATICS. Academic Press. 2017, Vol. 71. DOI: 10.1016/j.jbi.2017.06.015
  6. Chen Q, Zobel J, Verspoor C. Benchmarks for measurement of duplicate detection methods in nucleotide databases.. Database (Oxford). Oxford University Press. 2017. DOI: 10.1093/database/baw164
  7. Kiossoglou P, Borda A, Gray K, Martin Sanchez F, Verspoor C, Lopez Campos G. Characterising the scope of exposome research: A generalisable approach. Studies in Health Technology and Informatics. IOS Press. 2017, Vol. 245. DOI: 10.3233/978-1-61499-830-3-457
  8. Cohen KB, Lanfranchi A, Choi MJ-Y, Bada M, Baumgartner WA, Panteleyeva N, Verspoor C, Palmer M, Hunter LE. Coreference annotation and resolution in the Colorado Richly Annotated Full Text (CRAFT) corpus of biomedical journal articles. BMC BIOINFORMATICS. Biomed Central. 2017, Vol. 18, Issue 1. DOI: 10.1186/s12859-017-1775-9
  9. Pitson G, Banks P, Cavedon L, Verspoor C. Developing a Manually Annotated Corpus of Clinical Letters for Breast Cancer Patients on Routine Follow-Up. Studies in Health Technology and Informatics. IOS Press. 2017, Vol. 235. DOI: 10.3233/978-1-61499-753-5-196
  10. Khumrin P, Ryan A, Judd T, Verspoor C. Diagnostic machine learning models for acute abdominal pain: Towards an e-learning tool for medical students. Studies in Health Technology and Informatics. IOS Press. 2017, Vol. 245. DOI: 10.3233/978-1-61499-830-3-447
  11. Chen Q, Zobel J, Verspoor C. Duplicates, redundancies and inconsistencies in the primary nucleotide databases: a descriptive study. DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION. Oxford University Press. 2017. DOI: 10.1093/database/baw163
  12. Bouadjenek M, Verspoor C, Zobel J. Learning biological sequence types using the literature. International Conference on Information and Knowledge Management, Proceedings. 2017, Vol. Part F131841. DOI: 10.1145/3132847.3133051
  13. Bouadjenek M, Verspoor C, Zobel J. Literature consistency of bioinformatics sequence databases is effective for assessing record quality. DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION. Oxford University Press. 2017, Vol. 2017, Issue 1. DOI: 10.1093/database/bax021
  14. Bouadjenek M, Verspoor C. Multi-field query expansion is effective for biomedical dataset retrieval. DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION. Oxford University Press. 2017. DOI: 10.1093/database/bax062
  15. Hameed P, Verspoor C, Kusljic S, Halgamuge S. Positive-Unlabeled Learning for inferring drug interactions based on heterogeneous attributes. BMC BIOINFORMATICS. Biomed Central. 2017, Vol. 18, Issue 1. DOI: 10.1186/s12859-017-1546-7

View a full list of publications on the University of Melbourne’s ‘Find An Expert’ profile